PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g007300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 525aa    MW: 58893 Da    PI: 6.3549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g007300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004460482123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+++F++   L  H r+H
  Sopen05g007300.1 460 HECPFCDRVFKSGQALGGHKRSH 482
                       78******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.1584106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1284111IPR007087Zinc finger, C2H2
PfamPF139124.6E-785108IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-785106No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-7379406No hitNo description
PfamPF139122.0E-8384408IPR007087Zinc finger, C2H2
SMARTSM003556.2384406IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515384411IPR007087Zinc finger, C2H2
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
PfamPF139121.5E-10459482IPR007087Zinc finger, C2H2
SMARTSM003550.014460482IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432460482IPR007087Zinc finger, C2H2
PROSITE patternPS000280462482IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEDNQDLNFV GDKKSLCGNS LGGDMRSHVV EGNVEKFESW SSRETPHQSK FDVGSHSGYG  60
LRENPKKTWR AVDSTFSPLP PQERVCQQCG KVFQSMKALC GHMACHSEKL VMDSHSDTET  120
DDDDNDDEEE EEEETKMKTR SLKTKRYKRL VVKPSNYCLV NNNNNNGVVN YGSSSVSEID  180
ELDQEEVVAK CLMMLSRDTG NWNGVNSVVE SSDNNSVVLE TKSSSTDMKF GRKDRLKCVY  240
NQNETPGTKK LSGLDVDQAE SESSDSGYFL DDNTIVESDI SVDGFNRNGN SKWSTSQMSH  300
AESGVDKGKG LNRTKKYPIE SRKDITAECD YDDYAIASYI DKCEPRKRMK DSSYHPELGN  360
KSVKKIKLGP KSSERCNAIQ KKKYECLNCK KSFNSYQALG GHRPCHKKAN AYLESINGTG  420
ESSVDDKNRE TFSSRTPAST AKDQSYNPEK TIKPKKSQRH ECPFCDRVFK SGQALGGHKR  480
SHFIVGTEQN MNRSSAVKKV DDLLDLNLPA PLDDDDDEHA HLVSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075947.10.0PREDICTED: uncharacterized protein LOC107020161
TrEMBLK4BXX10.0K4BXX1_SOLLC; Uncharacterized protein
STRINGSolyc05g012490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-33C2H2-like zinc finger protein